How to customize QC and clustering.

Specify cells

Select a dataset and click the toggle to open subset controls:

QC Subset

You can subset based on default QC metrics, saved QC metrics, and clusters.

Exclude or include selection

Subsetting can be set to either exclude (default) or include cells that match the selected criteria:

QC Subset

Inclusion is usefull for selecting cells of interest to be re-clustered. This will generally increase the number of clusters as highly variable genes will be specific to the selected cells.

Custom genes for clustering

You can optionally specify a priori genes of interest to focus on specific biologic questions:

Custom HVGs

Submit subset

To begin subsetting, add a tag to append to the founder name and click the submit button:

Run Subset

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