Cell Type Deconvolution

Estimate cell type proportions in bulk samples using a single-cell dataset.

Run deconvolution

To run deconvolution, select a bulk dataset and click the cell-type deconvolution toggle:

Bulk Deconvolution

Next select a reference single-cell dataset and clusters that you want to use to estimate cell-type proportions:

Bulk Deconvolution

Click Submit cell-type deconvolution to begin.

When complete, you will see a plot of the estimated proportion of each cell-type in each bulk sample, summarized by bulk sample groups:

Bulk Deconvolution

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