Differential Analyses

Run expression and pathway analyses between test and control samples.

Download analyses

To run differential expression and pathway analyses, first select a test group followed by a control group. Then click the download button:

Download Analyses

Pathway analyses

Dseqr runs Gene Ontology over-representation analysis of significantly up- and down-regulated genes. This uses a cached adaptation of goana.

Surrogate variable analysis

Discovered surrogate variables can be optionally included as covariates for differential expression analyses:

Choose SVs

MDS plots

Multi-dimensional scaling plots are shown for both non-adjusted and adjusted data:

MDS plots

Gene plots

Viewing raw logcounts for a gene can be a useful addition to summary statistics. To show logcounts for a gene of interest summarized by groups, select a gene to show expression for:

Gene plots

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