How to integrate test and control samples. Prerequisite for sample comparison.
Click Integrate Datasets in the secondary navigation bar to open the integration modal. Then select datasets to integrate:
Three or more samples are needed for grid overlays and to calculate differential expression and abundance p-values.Datasets with two samples will only show logFC.
Then select integration types and provide a new dataset name. To begin integration, click Integrate Datasets:
You can select either harmony
and/or reference-based integration.The integration type will be added to the end of the name. For example:PBMCS_A_vs_B → PBMCS_A_vs_B_harmony
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